Protection is a High Priority for me.
I do at times like to live dangerously, and I have been known to use UNprotected LiIon.
However, I do not recommend my risk taking behavior to others.

IF I could confirm that the Vapcel has built in overdischarge protection, and I wanted to EDC the light myself, I might keep the resistor as is, for now.

I might even carry it with UNprotected cells, but that requires more presence of mind than I may have available at times.

(I did read that the minimum discharge spec is 2.5v, and I share your wishful thinking that it has overdischarge protection. Trust, but Verify)

In the grand scheme of things
I would prefer if the light worked with the provided Protected 16340 cell.