I just left them on the charger until the charger terminated and said “done”, then read the numbers and posted them.
I don’t know of any way to set a C-9000 to any different parameters. Other chargers might be different, but this is all I have.
Well the numbers look good so I don’t think it’s anything to worry about.
Robot girls .... Seemed like the perfect solution to an age old problem .
then she left me for a Subaru.
I’ve been using Eneloop and Eneloop Pro for about a year and I’ve been very happy. I’m always glad to see more confirmation of a good investment. 
Just a quick final update; the last eight cells dated June 2006 have completed their break in cycle on the Maha C-9000 charger.
Average capacity works out to 1920.2 mAh with a variance of –20 / +46 mAh.
The lowest indicated 1900 mAh, while the highest is 1966 mAh, with the rest clustered nearer the average.
On a less encouraging note, I managed to destroy a FourSevens Mini M2A trying to open it for an emitter upgrade. Oh well… 
…I tried!
What was that someone said about glue?
I have 8x standard AA and AAA eneloop unopened since 2013.
Also 8x unopened AAA eneloop XXsince 2017
Lets keep them unused for… 15 years and see what happens.
Eneloop powaaaa
If I’m still here in 15 years and this forum is still a thing, I look forward to seeing the results.